generate doxygen documentation

Doxyfile

+# Doxyfile 1.8.17
+
+# Project related settings
+PROJECT_NAME           = "PFTruth Standalone"
+PROJECT_BRIEF          = "A standalone project for PFTruth"
+OUTPUT_DIRECTORY       = /web/abrusamolino/public_html/PFTruthStandalone/
+OUTPUT_LANGUAGE        = English
+JAVADOC_AUTOBRIEF      = YES
+QT_AUTOBRIEF           = YES
+MARKDOWN_SUPPORT       = YES
+
+# Build related settings
+EXTRACT_ALL            = YES
+SHOW_INCLUDE_FILES     = YES
+SHOW_USED_FILES        = YES
+SHOW_FILES             = YES
+SHOW_NAMESPACES        = YES
+
+# Configuration options related to the input files
+INPUT                  = src interface
+FILE_PATTERNS          = *.h *.cc
+RECURSIVE              = YES
+
+# Configuration options related to source browsing
+SOURCE_BROWSER         = YES
+INLINE_SOURCES         = YES
+REFERENCED_BY_RELATION = YES
+REFERENCES_RELATION    = YES
+REFERENCES_LINK_SOURCE = YES
+SOURCE_TOOLTIPS        = YES
+
+# Configuration options related to the alphabetical index
+ALPHABETICAL_INDEX     = YES
+
+# Configuration options related to the HTML output
+GENERATE_HTML          = YES
+HTML_OUTPUT            = html
+HTML_TIMESTAMP         = YES
+HTML_DYNAMIC_SECTIONS  = YES
+GENERATE_TREEVIEW      = YES
+TREEVIEW_WIDTH         = 250
+SEARCHENGINE           = YES
+
+# Configuration options related to the LaTeX output
+GENERATE_LATEX         = NO
+LATEX_TIMESTAMP        = YES
+
+# Configuration options related to the preprocessor
+MACRO_EXPANSION        = YES
+SEARCH_INCLUDES        = YES
+SKIP_FUNCTION_MACROS   = YES
+
+# Configuration options related to the dot tool
+CLASS_DIAGRAMS         = YES
+HAVE_DOT               = YES
+CLASS_GRAPH            = YES
+COLLABORATION_GRAPH    = YES
+GROUP_GRAPHS           = YES
+INCLUDE_GRAPH          = YES
+INCLUDED_BY_GRAPH      = YES
+CALL_GRAPH             = YES
+CALLER_GRAPH           = YES
+GRAPHICAL_HIERARCHY    = YES
+DIRECTORY_GRAPH        = YES
+DOT_IMAGE_FORMAT       = png
+INTERACTIVE_SVG        = YES
+DOT_TRANSPARENT        = YES
+DOT_MULTI_TARGETS      = YES
+GENERATE_LEGEND        = YES
+DOT_CLEANUP            = YES
\ No newline at end of file

run-workflow.sh

@@ -123,6 +123,8 @@ if $recompile ; then
     print_step "Compiling the project"
     make -s -j $NWORKERS
     cd ${CURRENT_DIR}
+    print_step "Generating the documentation"
+    doxygen Doxyfile
 fi
 
 if $run_merging ; then