Updated installation scripts

setup.sh

@@ -2,48 +2,10 @@ GKUSER=gks
 PASSWORD=thebestscipyintroductionatthegridkaschool
 
 # Install required packages
-apt-get install python3-pip python3-virtualenv
-apt-get install libfreetype6-dev libpng12-dev pkg-config
-apt-get install llvm libedit-dev
-apt-get install git
+apt-get update
+apt-get install -y python3-pip python3-virtualenv
+apt-get install -y libfreetype6-dev libpng12-dev pkg-config
+apt-get install -y llvm libedit-dev
+apt-get install -y git
 
-# Change to user account and to his home directory
-su $GKUSER
-cd
-
-# Setup python environment
-python3 -m virtualenv -p python3 venv
-source venv/bin/activate
-pip3 install -U pip3 setuptools
-pip3 install numpy
-pip3 install widgetsnbextension
-pip3 install jupyter ipython matplotlib pandas scipy scikit-learn sympy
-pip3 install Cython tensorflow
-pip3 install llvmlite==0.5.0
-pip3 install numba
-pip3 install xgboost
-pip3 install WordCloud numexpr theano 
-pip3 install --upgrade jupyter
-
-# Clone git repository
-git clone https://gitlab.ekp.kit.edu/tkeck/GridKaSchool.git
-
-# Generate SSL Certificate
-openssl req -x509 -nodes -days 365 -newkey rsa:1024 -keyout jupyter_key.key -out jupyter_cert.pem
-mkdir ssl
-mv jupyter_key.key ssl/ 
-mv jupyter_cert.pem ssl/ 
-
-# Configure Jupyter notebook
-jupyter notebook --generate-config
-echo "c.NotebookApp.certfile = '/home/$GKUSER/ssl/jupyter_cert.pem'" >> .jupyter/jupyter_notebook_config.py
-echo "c.NotebookApp.ip = '*'" >> .jupyter/jupyter_notebook_config.py
-echo "c.NotebookApp.keyfile = '/home/$GKUSER/ssl/jupyter_key.key'" >> .jupyter/jupyter_notebook_config.py
-echo "c.NotebookApp.open_browser = False" >> .jupyter/jupyter_notebook_config.py
-echo "c.NotebookApp.password = u'"$(python3 -c "from notebook.auth import passwd; print(passwd('$PASSWORD'))")"'" >> .jupyter/jupyter_notebook_config.py
-echo "c.NotebookApp.port = 8080" >> .jupyter/jupyter_notebook_config.py
-
-# Automatically source environment and workaround for
-# https://github.com/jupyter/notebook/issues/1318
-echo "source ~/venv/bin/activate" >> .bashrc
-echo "unset XDG_RUNTIME_DIR" >> .bashrc
+time su - "gks" -c "bash /tmp/uscript.sh"

uscript.sh

+#!/bin/bash
+cd
+
+# Setup python environment
+python3 -m virtualenv -p python3 venv
+source venv/bin/activate
+pip3 install setuptools==36.2.7
+pip3 install pip==9.0.1
+pip3 install numpy==1.13.1
+pip3 install jupyter==1.0.0
+pip3 install matplotlib==2.0.2
+pip3 install scipy==0.19.1
+pip3 install pandas==0.20.2
+pip3 install sympy==1.1.1
+pip3 install scikit-learn==0.19.0
+pip3 install tensorflow==1.3.0
+pip3 install xgboost==0.6a2
+pip3 install theano==0.10.0b1
+pip3 install Cython==0.26
+pip3 install llvmlite==0.5.0
+pip3 install numba==0.34.0
+pip3 install numexpr==2.6.2
+pip3 install WordCloud==1.3.1
+
+# Clone git repository
+git clone https://gitlab.ekp.kit.edu/tkeck/GridKaSchool.git
+
+# Generate SSL Certificate
+openssl req -x509 -nodes -days 365 -newkey rsa:1024 -keyout jupyter_key.key -out jupyter_cert.pem <<CERTEOF
+DE
+BW
+KA
+KIT
+SCC
+$(hostname).scc.kit.edu
+.
+CERTEOF
+mkdir ssl
+mv jupyter_key.key ssl/ 
+mv jupyter_cert.pem ssl/ 
+
+# Configure Jupyter notebook
+jupyter notebook --generate-config
+echo "c.NotebookApp.certfile = '/home/gks/ssl/jupyter_cert.pem'" >> .jupyter/jupyter_notebook_config.py
+echo "c.NotebookApp.ip = '*'" >> .jupyter/jupyter_notebook_config.py
+echo "c.NotebookApp.keyfile = '/home/gks/ssl/jupyter_key.key'" >> .jupyter/jupyter_notebook_config.py
+echo "c.NotebookApp.open_browser = False" >> .jupyter/jupyter_notebook_config.py
+echo "c.NotebookApp.password = u'"$(python3 -c "from notebook.auth import passwd; print(passwd('$PASSWORD'))")"'" >> .jupyter/jupyter_notebook_config.py
+echo "c.NotebookApp.port = 8080" >> .jupyter/jupyter_notebook_config.py
+
+# Automatically source environment and workaround for
+# https://github.com/jupyter/notebook/issues/1318
+echo "source ~/venv/bin/activate" >> .bashrc
+echo "unset XDG_RUNTIME_DIR" >> .bashrc
+